notesum.ai
Published at November 6DART-PIM: DNA read mApping acceleRaTor Using Processing-In-Memory
cs.AR
cs.DC
q-bio.QM
Released Date: November 6, 2024
Authors: Rotem Ben-Hur1, Orian Leitersdorf1, Ronny Ronen1, Lidor Goldshmidt1, Idan Magram1, Lior Kaplun, Leonid Yavitz1, Shahar Kvatinsky1
Aff.: 1Unknown

| Parameter | Context | Value |
|---|---|---|
| Read length () | Read mapping | |
| Minimizer length () | Read mapping | |
| Minimizer window length () | Read mapping | |
| Linear (affine) error threshold () | Read mapping | () |
| ==== | Wagner-Fischer | 1 |
| Reads FIFO rows | DART-PIM | |
| Linear Buffer rows | DART-PIM | |
| Affine Buffer rows | DART-PIM | |
| Low threshold (lowTh) | DART-PIM | |
| Maximum allowed read (max reads) | DART-PIM | k |
| Low cell resistance () | RRAM | |
| High cell resistance () | RRAM |