notesum.ai
Published at November 29Multimodal Whole Slide Foundation Model for Pathology
eess.IV
cs.AI
cs.CV
cs.LG
stat.AP
Released Date: November 29, 2024
Authors: Tong Ding, Sophia J. Wagner, Andrew H. Song, Richard J. Chen, Ming Y. Lu, Andrew Zhang, Anurag J. Vaidya, Guillaume Jaume, Muhammad Shaban, Ahrong Kim, Drew F. K. Williamson, Bowen Chen, Cristina Almagro-Perez, Paul Doucet, Sharifa Sahai, Chengkuan Chen, Daisuke Komura, Akihiro Kawabe, Shumpei Ishikawa, Georg Gerber, Tingying Peng, Long Phi Le, Faisal Mahmood

| Tissue site | OncoTree code | #samples (train:val:test) |
| Adrenal gland | ACC | 227 (158:50:19) |
| PHC | 163 (118:27:18) | |
| Bladder | BLCA | 457 (376:49:32) |
| Bowel | COAD | 375 (278:49:48) |
| READ | 156 (113:25:18) | |
| MACR | 63 (48:11:4) | |
| Brain | GBM | 858 (798:50:10) |
| OAST | 217 (165:45:7) | |
| ODG | 203 (152:46:5) | |
| AASTR | 164 (113:39:12) | |
| AOAST | 155 (112:41:2) | |
| ASTR | 104 (64:33:7) | |
| Breast | IDC | 838 (743:49:46) |
| ILC | 211 (154:36:21) | |
| Cervix | CESC | 229 (134:40:55) |
| Eye | UM | 79 (34:10:35) |
| Head and neck | HNSC | 472 (338:47:87) |
| Kidney | CCRCC | 519 (455:49:15) |
| PRCC | 297 (197:46:54) | |
| CHRCC | 109 (65:19:25) | |
| Liver | HCC | 362 (303:46:13) |
| Lung | LUAD | 531 (305:48:178) |
| LUSC | 512 (364:48:100) | |
| Melanoma | MEL | 393 (347:31:15) |
| Ovary | HGSOC | 107 (75:23:9) |
| Pancreas | PAAD | 194 (135:32:27) |
| Pleura | PLEMESO | 62 (43:17:2) |
| Prostate | PRAD | 449 (382:44:23) |
| Skin | SKCM | 75 (36:29:10) |
| Soft tissue | MFH | 165 (119:40:6) |
| LMS | 155 (108:37:10) | |
| MFS | 141 (91:41:9) | |
| DDLS | 87 (56:29:2) | |
| THYM | 34 (18:6:10) | |
| Stomach | STAD | 193 (114:46:33) |
| ESCC | 92 (60:12:20) | |
| TSTAD | 87 (45:14:28) | |
| DSTAD | 74 (57:14:3) | |
| ESCA | 66 (44:10:12) | |
| Testis | NSGCT | 128 (78:43:7) |
| SEM | 91 (55:32:4) | |
| Thymus | THYM | 146 (68:35:43) |
| Thyroid | THPA | 408 (253:45:110) |
| THFO | 109 (41:11:57) | |
| Uterus | UEC | 422 (308:44:70) |
| USC | 120 (64:40:16) | |
| UCS | 87 (42:34:11) |